Apple Cookies (Soft-Baked And Naturally Sweetened)

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These soft-baked apple cookies are the perfect, cozy, and whole-food treat for fall. They are soft, with just a hint of cinnamon, and made with oat flour and almond flour. You’ll bite into a cookie filled with delicious apple pieces, and no refined sugar. They are the perfect afternoon snack or a healthy fall dessert.

Front focus. A stack of apple cookies sits on a wood surface with an apple behind it and to the left.

Soft, cinnamon-spiced apple cookies made with oat and almond flour, and sweetened naturally with honey. Gluten-free, dairy-free, and perfect for a cozy fall snack or healthy dessert.

Why You’ll Love These Apple Cookies

  • Soft, chewy, and warmly spiced
  • Naturally sweet with no refined sugar
  • Gluten-free & dairy-free
  • Great for snacks, lunchboxes, or breakfast cookies


Every fall, when apples are at their sweetest and the air starts to cool, I crave simple, homemade snacks that make the house smell amazing. These apple cookies are just that kind of recipe. A cozy, wholesome treat that’s easy to make and feels like a warm hug. They’re sweet enough for dessert, but wholesome enough for breakfast.

How To Serve Apple Cookies

  • Enjoy with a cup of coffee or tea.
  • Crumble one over cottage cheese for a fall-inspired breakfast.
  • Pack them in school lunches. They travel well and stay soft.
  • Serve as a dessert with a cup of warm apple cider.
Angled overhead focus of four apple cookies in a stack. An apple sits behind the stack.

What You’ll Need To Make These Healthy Apple Cookies

  • An egg
  • Unsweetened almond milk – You can also use oat milk or regular dairy milk.
  • Honey – Any type you have on hand.
  • Diced apples – I used Pink Lady apples for their sweetness, but Honeycrisp or Fuji will work as well. If you use a Granny Smith, you may want to add an extra tbsp. of sweetener.
  • Almond flour – This is not the same as almond meal. You want almond flour here.
  • Oat flour – If you are gluten-free, make sure to purchase oat flour labeled as such.
  • Ground flaxseed – I grind my own, but you can purchase them already ground.
  • Baking powder – If you are gluten-free, make sure to purchase this labeled as gluten-free.
  • Ground cinnamon
  • Ground nutmeg
  • Salt

How To Make Apple Cookies (Step-By-Step Instructions)

Step 1 – Preheat

350 degrees set on an oven display.


Preheat oven to 350°F (175°C).

Step 2 – Mix Wet Ingredients

A mixing bowl holding the wet ingredients for apple cookies.
Wet ingredients for apple cookies whisked together in a mixing bowl.

In a medium bowl, whisk egg, milk (or water), and sweetener.

Step 3 – Add Dry Ingredients

Dry ingredients added to wet ingredients for apple cookies.
Apple cookie batter whisked together in a mixing bowl.

Stir in almond flour, oat flour, flax, baking powder, cinnamon, nutmeg, and salt. Mix into a thick batter.

Step 4 – Add The Apples

Chopped apple added to cookie batter in a mixing bowl.
The mixed apple cookie batter in a mixing bowl.

Fold in the diced apple.

Step 5 – Scoop

Apple cookie batter spooned onto a parchment-lined baking sheet.

Place six equal spoonfuls on a parchment-lined baking sheet.

Step 6 – Bake & Cool

A stack of apple cookies on a wood surface with a whole apple behind it.

Bake for 20 minutes. Cool completely before serving.

Pro Recipe Tips

  • Don’t over-mix the dough. Stop the moment everything is combined.
  • Measure the apple after fine-dicing. Measure a flat cup. Too much apple will make these fall apart.
  • Line your pan with parchment. It helps them bake evenly and prevents sticking.
  • Let them cool fully. They fall apart when warm. Cooling them completely before removing them from the baking pan is critical.

Flavor Variations

  • Apple Pie Flavor: Add a pinch of clove and ½ tsp allspice.
  • Apple Oatmeal Cookies: Add 2 tbsp rolled oats for texture.
  • Apple Walnut Cookies: Fold in ¼ cup chopped walnuts along with the chopped apples.

Storing And Freezing Soft Baked Apple Cookies

  • Refrigerate: Keeps up to 5 days.
  • Freeze: Keeps up to 3 months; thaw at room temp or warm in a low oven.
Front focus. A stack of four apple cookies on a wood surface. An apple sits behind them to the right.

FAQs About Apple Cookies

Can I make these vegan?

Yes. Simply replace the egg with a flax egg (1 tbsp. flaxseed + 3 tbsp. water, rest 5 minutes), or with a vegan egg replacement.

Can I use whole-wheat flour instead of oat and almond?

Yes, but the texture will be denser and less tender. Use 1/2 cup whole wheat flour.

Can I use applesauce instead of diced apples?

That is not recommended for this recipe.

Can I add a glaze on top?

Yes. Mix 2 tbsp. powdered sweetener with 1 tsp. unsweetened almond milk and a pinch of cinnamon for a light drizzle.

More Healthy Cookie Recipes

Front focus. A stack of apple cookies sits on a wood surface with an apple behind it and to the left.

Apple Cookies Recipe

A small-yield, low-sugar, gluten-free, Autumn treat you won't be able to stop eating.
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Course: Dessert, Snack
Cuisine: American
Prep Time: 10 minutes
Cook Time: 20 minutes
Total Time: 30 minutes
Servings: 6 cookies
Calories: 88kcal

Equipment

  • 1 standard sheet pan
  • Parchment paper

Ingredients

Wet Ingredients

  • 1 large egg
  • 1 tbsp. unsweetened almond milk
  • 1 tbsp. honey

Dry Ingredients

  • ¼ cup almond flour
  • ¼ cup oat flour (gluten-free if needed)
  • 1 tbsp. ground flaxseed
  • 1 tsp. baking powder (gluten-free if needed)
  • ½ tsp. ground cinnamon
  • ¼ tsp. ground nutmeg
  • 1 pinch salt

Apples

  • 1 cup diced apples (peeled and diced small)

Instructions

  • Preheat oven to 350°F (175°C).
    350 degrees set on an oven display.
  • In a medium bowl, whisk egg, milk (or water), and sweetener.
    Wet ingredients for apple cookies whisked together in a mixing bowl.
  • Stir in almond flour, oat flour, flax, baking powder, cinnamon, nutmeg, and salt. Mix into a thick batter.
    Apple cookie batter whisked together in a mixing bowl.
  • Fold in the diced apple.
    The mixed apple cookie batter in a mixing bowl.
  • Place six equal spoonfuls on a parchment-lined baking sheet.
    Apple cookie batter spooned onto a parchment-lined baking sheet.
  • Bake for 20 minutes. Cool completely before serving.
    A stack of apple cookies on a wood surface with a whole apple behind it.

Notes

Please note that the nutrition data given here is a ballpark figure. Exact data is not possible.

Nutrition

Serving: 1cookie | Calories: 88kcal | Carbohydrates: 11g | Protein: 3g | Fat: 4g | Saturated Fat: 1g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 1g | Trans Fat: 0.003g | Cholesterol: 31mg | Sodium: 24mg | Potassium: 132mg | Fiber: 2g | Sugar: 5g | Vitamin A: 57IU | Vitamin C: 1mg | Calcium: 55mg | Iron: 1mg

Author: Tiffany McCauley

Title: Food and Travel Journalist

Expertise: Food, cooking, travel

Bio:

Tiffany McCauley is a nationally syndicated writer and an award-winning cookbook author and food blogger. She has been featured on MSN, Huffington Post, Country Living Magazine, HealthLine, Redbook, and many more. Her food specialty is healthy comfort food recipes.

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